1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.9G529300.1

Seita.9G529300.1


Description : topoisomerase 3alpha


Gene families : OG_01_0012444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012444_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G529300.1
Cluster Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003916 DNA topoisomerase activity ISM GOs from InterProScan
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity ISM GOs from InterProScan
CC GO:0005694 chromosome ISM GOs from InterProScan
BP GO:0006265 DNA topological change ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR010666 Znf_GRF ProSiteProfiles 806 845
IPR001878 Znf_CCHC ProSiteProfiles 900 915
IPR006171 TOPRIM_domain Pfam 13 156
IPR003601 Topo_IA_2 SMART 148 249
IPR006171 TOPRIM_domain SMART 11 145
IPR034144 TOPRIM_TopoIII CDD 11 169
IPR013497 Topo_IA_cen PRINTS 119 132
IPR013497 Topo_IA_cen PRINTS 517 531
IPR013497 Topo_IA_cen PRINTS 419 435
IPR013497 Topo_IA_cen PRINTS 337 346
IPR013497 Topo_IA_cen PRINTS 219 237
IPR023405 Topo_IA_core_domain SUPERFAMILY 12 602
IPR003602 Topo_IA_DNA-bd_dom SMART 295 555
IPR013825 Topo_IA_cen_sub2 Gene3D 243 501
IPR010666 Znf_GRF Pfam 804 844
IPR023406 Topo_IA_AS ProSitePatterns 332 346
IPR013498 Topo_IA_Znf Pfam 639 676
IPR013826 Topo_IA_cen_sub3 Gene3D 303 433
IPR013824 Topo_IA_cen_sub1 Gene3D 179 603
IPR013497 Topo_IA_cen CDD 176 603
IPR006171 TOPRIM_domain ProSiteProfiles 11 155
IPR013497 Topo_IA_cen Pfam 174 592
IPR000380 Topo_IA PANTHER 11 814
IPR013498 Topo_IA_Znf Pfam 639 676
IPR013825 Topo_IA_cen_sub2 Gene3D 243 501
IPR010666 Znf_GRF Pfam 804 844
IPR006171 TOPRIM_domain Pfam 13 156
IPR013826 Topo_IA_cen_sub3 Gene3D 303 433
IPR006171 TOPRIM_domain ProSiteProfiles 11 155
IPR034144 TOPRIM_TopoIII CDD 11 169
IPR006171 TOPRIM_domain SMART 11 145
IPR013497 Topo_IA_cen PRINTS 119 132
IPR013497 Topo_IA_cen PRINTS 517 531
IPR013497 Topo_IA_cen PRINTS 419 435
IPR013497 Topo_IA_cen PRINTS 337 346
IPR013497 Topo_IA_cen PRINTS 219 237
IPR000380 Topo_IA PANTHER 11 703
IPR003601 Topo_IA_2 SMART 148 249
IPR013497 Topo_IA_cen Pfam 173 592
IPR023405 Topo_IA_core_domain SUPERFAMILY 12 602
IPR003602 Topo_IA_DNA-bd_dom SMART 295 555
IPR013497 Topo_IA_cen CDD 176 603
IPR023406 Topo_IA_AS ProSitePatterns 332 346
IPR013824 Topo_IA_cen_sub1 Gene3D 179 603
IPR001878 Znf_CCHC ProSiteProfiles 900 915

No CAZYmes available for this sequence

No external refs found!