Seita.9G537700.1

Description : ATPase, AAA-type, CDC48 protein

Gene families : OG_01_0002803 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002803_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G537700.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_155

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	ISM	GOs from InterProScan
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003338	CDC4_N-term_subdom	SMART	31	114
IPR029067	CDC48_domain_2-like_sf	SUPERFAMILY	113	205
IPR027417	P-loop_NTPase	SUPERFAMILY	477	765
IPR027417	P-loop_NTPase	SUPERFAMILY	205	467
IPR041569	AAA_lid_3	Pfam	398	439
IPR041569	AAA_lid_3	Pfam	674	715
IPR003960	ATPase_AAA_CS	ProSitePatterns	622	640
IPR003593	AAA+_ATPase	SMART	515	654
IPR003593	AAA+_ATPase	SMART	242	378
IPR004201	Cdc48_dom2	Pfam	132	196
IPR005938	AAA_ATPase_CDC48	NCBIfam	32	768
IPR004201	Cdc48_dom2	SMART	131	197
IPR009010	Asp_de-COase-like_dom_sf	SUPERFAMILY	27	111
IPR027417	P-loop_NTPase	Gene3D	211	375
IPR003960	ATPase_AAA_CS	ProSitePatterns	346	364
IPR003338	CDC4_N-term_subdom	Pfam	31	112
IPR027417	P-loop_NTPase	Gene3D	469	652
IPR003959	ATPase_AAA_core	Pfam	246	375
IPR003959	ATPase_AAA_core	Pfam	519	652
IPR003338	CDC4_N-term_subdom	SMART	31	114
IPR027417	P-loop_NTPase	SUPERFAMILY	205	467
IPR003959	ATPase_AAA_core	Pfam	519	652
IPR003959	ATPase_AAA_core	Pfam	246	375
IPR003960	ATPase_AAA_CS	ProSitePatterns	346	364
IPR004201	Cdc48_dom2	Pfam	132	196
IPR041569	AAA_lid_3	Pfam	674	715
IPR041569	AAA_lid_3	Pfam	398	439
IPR027417	P-loop_NTPase	SUPERFAMILY	477	765
IPR003593	AAA+_ATPase	SMART	515	654
IPR003593	AAA+_ATPase	SMART	242	378
IPR004201	Cdc48_dom2	SMART	131	197
IPR003338	CDC4_N-term_subdom	Pfam	31	112
IPR005938	AAA_ATPase_CDC48	TIGRFAM	32	768
IPR009010	Asp_de-COase-like_dom_sf	SUPERFAMILY	27	111
IPR027417	P-loop_NTPase	Gene3D	469	652
IPR003960	ATPase_AAA_CS	ProSitePatterns	622	640
IPR029067	CDC48_domain_2-like_sf	SUPERFAMILY	113	205
IPR027417	P-loop_NTPase	Gene3D	211	375

No CAZYmes available for this sequence

External Links

No external refs found!