Seita.9G563300.1

Description : RNA helicase family protein

Gene families : OG_01_0007360 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007360_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica coexpression network - v0.2 (X-meeting 2023): Seita.9G563300.1
Cluster	Setaria italica HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR048333	HA2_WH	Pfam	814	845
IPR027417	P-loop_NTPase	SUPERFAMILY	221	868
IPR001650	Helicase_C	Pfam	659	750
IPR027417	P-loop_NTPase	Gene3D	210	450
IPR027417	P-loop_NTPase	Gene3D	451	523
IPR027417	P-loop_NTPase	Gene3D	586	767
IPR014001	Helicase_ATP-bd	ProSiteProfiles	252	444
IPR001650	Helicase_C	SMART	649	750
IPR014001	Helicase_ATP-bd	SMART	240	452
IPR011709	DEAD-box_helicase_OB_fold	Pfam	1029	1116
IPR001650	Helicase_C	ProSiteProfiles	628	793
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	249	427
IPR002464	DNA/RNA_helicase_DEAH_CS	ProSitePatterns	363	372
IPR007502	Helicase-assoc_dom	SMART	813	946
IPR001650	Helicase_C	ProSiteProfiles	628	793
IPR027417	P-loop_NTPase	SUPERFAMILY	221	868
IPR007502	Helicase-assoc_dom	Pfam	814	944
IPR002464	DNA/RNA_helicase_DEAH_CS	ProSitePatterns	363	372
IPR014001	Helicase_ATP-bd	SMART	240	452
IPR001650	Helicase_C	SMART	649	750
IPR027417	P-loop_NTPase	Gene3D	451	523
IPR027417	P-loop_NTPase	Gene3D	586	767
IPR001650	Helicase_C	Pfam	659	750
IPR007502	Helicase-assoc_dom	SMART	813	946
IPR011709	DEAD-box_helicase_OB_fold	Pfam	1029	1116
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	249	430
IPR027417	P-loop_NTPase	Gene3D	210	450
IPR014001	Helicase_ATP-bd	ProSiteProfiles	252	444

No CAZYmes available for this sequence

External Links

No external refs found!