Sevir.7G077900.1

Description : splicing factor-related

Gene families : OG_01_0006030 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006030_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G077900.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G077900.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_98

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR035979	RBD_domain_sf	SUPERFAMILY	432	539
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	420	520
IPR004088	KH_dom_type_1	Pfam	210	280
IPR001878	Znf_CCHC	SMART	316	332
IPR001878	Znf_CCHC	SMART	342	358
IPR000504	RRM_dom	Pfam	438	507
IPR004087	KH_dom	SMART	195	287
IPR036612	KH_dom_type_1_sf	SUPERFAMILY	195	321
IPR000504	RRM_dom	ProSiteProfiles	436	514
IPR045071	BBP-like	PANTHER	33	729
IPR001878	Znf_CCHC	ProSiteProfiles	317	332
IPR032570	SF1-HH	Pfam	82	191
IPR036612	KH_dom_type_1_sf	Gene3D	187	315
IPR036875	Znf_CCHC_sf	SUPERFAMILY	313	359
IPR000504	RRM_dom	SMART	437	510

No CAZYmes available for this sequence

External Links

No external refs found!