Sevir.7G084600.2

Description : zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0004401 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004401_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G084600.2
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G084600.2	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	735	808
IPR045137	RBM26/27	PANTHER	4	863
IPR000571	Znf_CCCH	SMART	222	248
IPR000504	RRM_dom	ProSiteProfiles	450	522
IPR035979	RBD_domain_sf	SUPERFAMILY	735	820
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	381	527
IPR000504	RRM_dom	SMART	451	518
IPR000504	RRM_dom	SMART	724	806
IPR035979	RBD_domain_sf	SUPERFAMILY	427	528
IPR000571	Znf_CCCH	ProSiteProfiles	221	249
IPR000504	RRM_dom	Pfam	452	515

No CAZYmes available for this sequence

External Links

No external refs found!