Sevir.7G109700.1

Description : Methylthiotransferase

Gene families : OG_01_0003003 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003003_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G109700.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G109700.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_7
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_21

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006400	tRNA modification	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	ISM	GOs from InterProScan
MF	GO:0016782	transferase activity, transferring sulphur-containing groups	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035596	methylthiotransferase activity	ISM	GOs from InterProScan
MF	GO:0035598	N6-threonylcarbomyladenosine methylthiotransferase activity	ISM	GOs from InterProScan
BP	GO:0035600	tRNA methylthiolation	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0050497	alkylthioltransferase activity	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051539	4 iron, 4 sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006638	Elp3/MiaA/NifB-like_rSAM	SMART	188	408
IPR006466	MiaB-like_arc_euk	TIGRFAM	57	478
IPR013848	Methylthiotransferase_N	ProSiteProfiles	55	163
IPR020612	Methylthiotransferase_CS	ProSitePatterns	192	212
IPR038135	Methylthiotransferase_N_sf	Gene3D	56	175
IPR007197	rSAM	SFLD	122	400
IPR013848	Methylthiotransferase_N	Pfam	57	134
IPR007197	rSAM	Pfam	195	367
IPR007197	rSAM	ProSiteProfiles	184	416
IPR002792	TRAM_dom	ProSiteProfiles	417	479
IPR023404	rSAM_horseshoe	Gene3D	186	417
IPR005839	Methylthiotransferase	TIGRFAM	56	473

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.7G109700.1

Expression Profile

Co-expression Networks

Functional Annotation