Sevir.1G240600.2

Description : polyribonucleotide nucleotidyltransferase, putative

Gene families : OG_01_0005316 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005316_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G240600.2
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.1G240600.2
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_140
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_34

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036456	PNPase_PH_RNA-bd_sf	SUPERFAMILY	416	518
IPR012340	NA-bd_OB-fold	SUPERFAMILY	804	889
IPR015848	PNPase_PH_RNA-bd_bac/org-type	Pfam	434	512
IPR036345	ExoRNase_PH_dom2_sf	SUPERFAMILY	642	742
IPR012162	PNPase	Hamap	193	888
IPR036345	ExoRNase_PH_dom2_sf	SUPERFAMILY	328	421
IPR012162	PNPase	PANTHER	185	958
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	483	687
IPR027408	PNPase/RNase_PH_dom_sf	Gene3D	427	753
IPR027408	PNPase/RNase_PH_dom_sf	Gene3D	192	426
IPR003029	S1_domain	Pfam	814	885
IPR015847	ExoRNase_PH_dom2	Pfam	337	400
IPR012340	NA-bd_OB-fold	SUPERFAMILY	1047	1109
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	193	334
IPR012162	PNPase	TIGRFAM	201	886
IPR003029	S1_domain	ProSiteProfiles	817	885
IPR001247	ExoRNase_PH_dom1	Pfam	515	648
IPR001247	ExoRNase_PH_dom1	Pfam	204	334

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.1G240600.2

Expression Profile

Co-expression Networks

Functional Annotation