1. Home
  2. Species
  3. Setaria viridis
  4. Sequence
  5. Sevir.7G144500.1

Sevir.7G144500.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0015625 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015625_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G144500.1 No neighbors in network
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G144500.1
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_34


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 387 441
IPR011990 TPR-like_helical_dom_sf Gene3D 156 322
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 224 258
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 189 223
IPR002885 Pentatricopeptide_rpt Pfam 293 338
IPR002885 Pentatricopeptide_rpt Pfam 188 236
IPR011990 TPR-like_helical_dom_sf Gene3D 340 527
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 294 328
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 364 398
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 259 293
IPR002885 Pentatricopeptide_rpt TIGRFAM 192 224
IPR002885 Pentatricopeptide_rpt TIGRFAM 226 259
IPR002885 Pentatricopeptide_rpt TIGRFAM 262 294
IPR002885 Pentatricopeptide_rpt TIGRFAM 297 329
IPR002885 Pentatricopeptide_rpt TIGRFAM 367 399
IPR002885 Pentatricopeptide_rpt TIGRFAM 404 433
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 399 433

No CAZYmes available for this sequence

No external refs found!