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  5. Sevir.7G158800.1

Sevir.7G158800.1


Description : homolog of carrot EP3-3 chitinase


Gene families : OG_01_0002667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002667_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G158800.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G158800.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_28
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_260


Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
BP GO:0006032 chitin catabolic process ISM GOs from InterProScan
MF GO:0008061 chitin binding ISM GOs from InterProScan
BP GO:0016998 cell wall macromolecule catabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000726 Glyco_hydro_19_cat Pfam 230 277
IPR000726 Glyco_hydro_19_cat Pfam 83 223
IPR001002 Chitin-bd_1 ProSiteProfiles 26 61
IPR000726 Glyco_hydro_19_cat ProSitePatterns 97 119
IPR001002 Chitin-bd_1 Pfam 26 59
IPR016283 Glyco_hydro_19 PIRSF 1 277
IPR000726 Glyco_hydro_19_cat ProSitePatterns 211 221
IPR023346 Lysozyme-like_dom_sf SUPERFAMILY 76 277
IPR036861 Endochitinase-like_sf Gene3D 21 61
IPR036861 Endochitinase-like_sf SUPERFAMILY 26 60
IPR018371 Chitin-binding_1_CS ProSitePatterns 31 50
IPR001002 Chitin-bd_1 SMART 28 59
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM18 38 278 6e-11 25 59
GH19 231 278 5.9e-77 77 277
No external refs found!