Sevir.7G170600.1

Description : general transcription factor II H2

Gene families : OG_01_0010315 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010315_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G170600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G170600.1
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_188
Cluster	Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_67

Type	GO Term	Name	Evidence	Source
CC	GO:0000439	transcription factor TFIIH core complex	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005667	transcription regulator complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006351	DNA-templated transcription	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0090575	RNA polymerase II transcription regulator complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002035	VWF_A	ProSiteProfiles	101	240
IPR012170	TFIIH_SSL1/p44	TIGRFAM	318	425
IPR013087	Znf_C2H2_type	ProSitePatterns	398	418
IPR013083	Znf_RING/FYVE/PHD	Gene3D	356	431
IPR036465	vWFA_dom_sf	SUPERFAMILY	96	264
IPR002867	IBR_dom	Pfam	373	420
IPR007198	Ssl1-like	Pfam	105	295
IPR012170	TFIIH_SSL1/p44	PIRSF	11	426
IPR002035	VWF_A	SMART	99	275
IPR004595	TFIIH_C1-like_dom	SMART	377	425
IPR007198	Ssl1-like	CDD	97	279
IPR004595	TFIIH_C1-like_dom	Pfam	377	425
IPR036465	vWFA_dom_sf	Gene3D	95	280

No CAZYmes available for this sequence

External Links

No external refs found!

Sevir.7G170600.1

Expression Profile

Co-expression Networks

Functional Annotation