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  5. Sevir.7G204000.1

Sevir.7G204000.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0008000 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008000_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G204000.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G204000.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_101
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_83


Type GO Term Name Evidence Source
MF GO:0030599 pectinesterase activity ISM GOs from InterProScan
BP GO:0042545 cell wall modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000070 Pectinesterase_cat Pfam 48 339
IPR012334 Pectin_lyas_fold Gene3D 45 347
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 48 346
IPR033131 Pectinesterase_Asp_AS ProSitePatterns 202 211
HMM Family HMM Length Query Length e-Value Query Start Query End
CE8 288 349 5.1e-93 48 339
No external refs found!