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  5. Sevir.7G224500.1

Sevir.7G224500.1


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0011081 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011081_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G224500.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G224500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_57
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_85


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011011 Znf_FYVE_PHD SUPERFAMILY 639 707
IPR000408 Reg_chr_condens ProSiteProfiles 364 417
IPR013591 Brevis_radix_dom Pfam 996 1048
IPR000408 Reg_chr_condens ProSiteProfiles 584 635
IPR009091 RCC1/BLIP-II SUPERFAMILY 254 636
IPR013083 Znf_RING/FYVE/PHD Gene3D 648 708
IPR000408 Reg_chr_condens ProSiteProfiles 261 311
IPR000408 Reg_chr_condens Pfam 417 466
IPR000408 Reg_chr_condens Pfam 583 632
IPR000408 Reg_chr_condens Pfam 312 360
IPR000408 Reg_chr_condens Pfam 481 528
IPR000408 Reg_chr_condens ProSiteProfiles 418 469
IPR000408 Reg_chr_condens ProSiteProfiles 312 363
IPR000408 Reg_chr_condens ProSiteProfiles 480 531
IPR000408 Reg_chr_condens ProSitePatterns 456 466
IPR011993 PH-like_dom_sf Gene3D 13 126
IPR001849 PH_domain Pfam 15 123
IPR000306 Znf_FYVE Pfam 640 701
IPR000408 Reg_chr_condens ProSiteProfiles 532 583
IPR000306 Znf_FYVE SMART 634 703
IPR000408 Reg_chr_condens PRINTS 420 434
IPR000408 Reg_chr_condens PRINTS 295 308
IPR000408 Reg_chr_condens PRINTS 521 539
IPR000408 Reg_chr_condens PRINTS 579 600
IPR000408 Reg_chr_condens PRINTS 314 330
IPR000408 Reg_chr_condens PRINTS 404 420
IPR013591 Brevis_radix_dom ProSiteProfiles 994 1049
IPR027988 BRX_N Pfam 872 898
IPR009091 RCC1/BLIP-II Gene3D 473 647
IPR009091 RCC1/BLIP-II Gene3D 221 472
IPR017455 Znf_FYVE-rel ProSiteProfiles 640 702

No CAZYmes available for this sequence

No external refs found!