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  5. Sevir.7G225100.1

Sevir.7G225100.1


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0012784 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012784_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G225100.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G225100.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_118
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_123


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 588 622
IPR011990 TPR-like_helical_dom_sf Gene3D 408 543
IPR011990 TPR-like_helical_dom_sf Gene3D 173 306
IPR011990 TPR-like_helical_dom_sf Gene3D 309 407
IPR011990 TPR-like_helical_dom_sf Gene3D 83 171
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 725 759
IPR002885 Pentatricopeptide_rpt TIGRFAM 255 288
IPR002885 Pentatricopeptide_rpt TIGRFAM 488 523
IPR002885 Pentatricopeptide_rpt TIGRFAM 91 121
IPR002885 Pentatricopeptide_rpt TIGRFAM 123 156
IPR002885 Pentatricopeptide_rpt TIGRFAM 625 658
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 486
IPR002885 Pentatricopeptide_rpt TIGRFAM 356 383
IPR002885 Pentatricopeptide_rpt TIGRFAM 590 623
IPR032867 DYW_dom Pfam 761 874
IPR011990 TPR-like_helical_dom_sf Gene3D 587 782
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 89 123
IPR002885 Pentatricopeptide_rpt Pfam 562 582
IPR002885 Pentatricopeptide_rpt Pfam 328 354
IPR002885 Pentatricopeptide_rpt Pfam 428 456
IPR002885 Pentatricopeptide_rpt Pfam 356 382
IPR002885 Pentatricopeptide_rpt Pfam 662 687
IPR002885 Pentatricopeptide_rpt Pfam 87 116
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 253 287
IPR002885 Pentatricopeptide_rpt Pfam 485 534
IPR002885 Pentatricopeptide_rpt Pfam 587 635
IPR002885 Pentatricopeptide_rpt Pfam 252 301
IPR002885 Pentatricopeptide_rpt Pfam 120 167
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 354 388

No CAZYmes available for this sequence

No external refs found!