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Description : nucleotide binding;nucleic acid binding;RNA binding
Gene families : OG_01_0002713 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002713_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G245000.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G245000.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_167 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 346 | 611 |
| IPR003954 | RRM_dom_euk | SMART | 761 | 832 |
| IPR003954 | RRM_dom_euk | SMART | 661 | 739 |
| IPR003954 | RRM_dom_euk | SMART | 4 | 76 |
| IPR003954 | RRM_dom_euk | SMART | 346 | 419 |
| IPR000504 | RRM_dom | ProSiteProfiles | 345 | 423 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 652 | 749 |
| IPR000504 | RRM_dom | ProSiteProfiles | 540 | 612 |
| IPR000504 | RRM_dom | ProSiteProfiles | 760 | 836 |
| IPR000504 | RRM_dom | Pfam | 662 | 736 |
| IPR000504 | RRM_dom | Pfam | 5 | 73 |
| IPR000504 | RRM_dom | Pfam | 762 | 829 |
| IPR000504 | RRM_dom | Pfam | 347 | 416 |
| IPR000504 | RRM_dom | Pfam | 542 | 604 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 641 | 755 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 1 | 130 |
| IPR000504 | RRM_dom | ProSiteProfiles | 3 | 80 |
| IPR000504 | RRM_dom | ProSiteProfiles | 660 | 743 |
| IPR034423 | RBM19_RRM5 | CDD | 660 | 741 |
| IPR000504 | RRM_dom | SMART | 541 | 608 |
| IPR000504 | RRM_dom | SMART | 346 | 419 |
| IPR000504 | RRM_dom | SMART | 761 | 832 |
| IPR000504 | RRM_dom | SMART | 661 | 739 |
| IPR000504 | RRM_dom | SMART | 4 | 76 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 303 | 429 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 756 | 858 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 530 | 630 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 3 | 98 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 754 | 838 |
No CAZYmes available for this sequence
| No external refs found! |