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  5. Sevir.1G253100.3

Sevir.1G253100.3


Description : expansin B3


Gene families : OG_01_0011984 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011984_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.1G253100.3
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_31


Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM GOs from InterProScan
BP GO:0019953 sexual reproduction ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR007112 Expansin/allergen_DPBB_dom ProSiteProfiles 1 97
IPR036749 Expansin_CBD_sf SUPERFAMILY 97 191
IPR007117 Expansin_CBD Pfam 99 180
IPR036908 RlpA-like_sf SUPERFAMILY 4 96
IPR007118 Expan_Lol_pI PRINTS 138 152
IPR007118 Expan_Lol_pI PRINTS 80 96
IPR007118 Expan_Lol_pI PRINTS 177 191
IPR007118 Expan_Lol_pI PRINTS 9 27
IPR009009 RlpA-like_DPBB Pfam 7 84
IPR005795 LolPI PRINTS 7 18
IPR005795 LolPI PRINTS 47 62
IPR005795 LolPI PRINTS 117 132
IPR005795 LolPI PRINTS 101 116
IPR005795 LolPI PRINTS 167 184
IPR005795 LolPI PRINTS 69 84
IPR036749 Expansin_CBD_sf Gene3D 94 196
IPR007117 Expansin_CBD ProSiteProfiles 110 191
IPR007112 Expansin/allergen_DPBB_dom SMART 5 87
IPR036908 RlpA-like_sf Gene3D 1 93
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM63 78 197 1.7e-05 101 173
No external refs found!