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  5. Sevir.7G325500.1

Sevir.7G325500.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0007839 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007839_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.7G325500.1
Neighborhood Setaria viridis coexpression network - Anderson et al (2021): Sevir.7G325500.1
Cluster Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_158
Cluster Setaria viridis HCCA coexpression clusters - Anderson et al (2021): Cluster_50


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 168 246
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 12 167
IPR000504 RRM_dom SMART 91 161
IPR000504 RRM_dom SMART 263 335
IPR000504 RRM_dom SMART 168 244
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 247 355
IPR035979 RBD_domain_sf SUPERFAMILY 88 166
IPR003954 RRM_dom_euk SMART 91 161
IPR003954 RRM_dom_euk SMART 263 335
IPR000504 RRM_dom Pfam 169 234
IPR000504 RRM_dom Pfam 264 331
IPR000504 RRM_dom Pfam 92 159
IPR000504 RRM_dom ProSiteProfiles 167 248
IPR000504 RRM_dom ProSiteProfiles 262 353
IPR000504 RRM_dom ProSiteProfiles 90 165
IPR035979 RBD_domain_sf SUPERFAMILY 167 341

No CAZYmes available for this sequence

No external refs found!