Sevir.8G007600.1

Description : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein

Gene families : OG_01_0001389 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001389_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.8G007600.1
Neighborhood	Setaria viridis coexpression network - Anderson et al (2021): Sevir.8G007600.1	No neighbors in network
Cluster	Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_83

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000571	Znf_CCCH	ProSiteProfiles	137	159
IPR036855	Znf_CCCH_sf	SUPERFAMILY	134	160
IPR035979	RBD_domain_sf	SUPERFAMILY	266	344
IPR000504	RRM_dom	ProSiteProfiles	255	331
IPR000571	Znf_CCCH	SMART	134	158
IPR012677	Nucleotide-bd_a/b_plait_sf	Gene3D	206	341
IPR034365	AtC3H46-like_RRM	CDD	257	326
IPR032297	Torus	Pfam	136	163
IPR000504	RRM_dom	Pfam	267	308
IPR000504	RRM_dom	SMART	256	326

No CAZYmes available for this sequence

External Links

No external refs found!