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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015007 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015007_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.8G011800.1 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.8G011800.1 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_78 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 491 | 620 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 269 | 383 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 140 | 268 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 668 | 702 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 288 | 322 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 698 | 716 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 250 | 281 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 459 | 493 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 563 | 597 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 424 | 458 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 598 | 632 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 182 | 216 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 253 | 287 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 384 | 490 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 496 | 525 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 220 | 247 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 188 | 213 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 531 | 560 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 718 | 835 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 621 | 717 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 528 | 562 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 323 | 357 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 633 | 667 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 603 | 634 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 531 | 563 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 635 | 669 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 670 | 703 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 290 | 323 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 256 | 289 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 428 | 459 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 325 | 359 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 188 | 217 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 565 | 599 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 424 | 472 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 562 | 611 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 287 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 632 | 681 |
No CAZYmes available for this sequence
| No external refs found! |