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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0006439 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006439_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria viridis coexpression network - v0.2 (X-meeting 2023): Sevir.8G034000.2 | |
| Neighborhood | Setaria viridis coexpression network - Anderson et al (2021): Sevir.8G034000.2 | No neighbors in network |
| Cluster | Setaria viridis HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_32 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 233 | 267 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 270 | 300 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 306 | 336 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 272 | 298 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 413 | 445 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 306 | 339 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 272 | 300 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 446 | 480 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 551 | 584 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 656 | 689 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 621 | 654 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 235 | 264 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 516 | 549 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 586 | 620 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 376 | 409 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 341 | 374 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 657 | 700 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 513 | 561 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 583 | 632 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 408 | 457 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 338 | 387 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 409 | 443 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 187 | 244 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 385 | 683 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 198 | 232 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 444 | 478 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 374 | 408 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 654 | 688 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 339 | 373 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 304 | 338 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 514 | 548 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 604 | 717 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 491 | 603 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 390 | 490 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 177 | 283 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 284 | 389 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 549 | 583 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 619 | 653 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 584 | 618 |
No CAZYmes available for this sequence
| No external refs found! |