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  5. Sobic.001G007800.1

Sobic.001G007800.1


Description : nucleotide binding;protein binding


Gene families : OG_01_0001100 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001100_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G007800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G007800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_332
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_214


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019775 WD40_repeat_CS ProSitePatterns 82 96
IPR001680 WD40_rpt ProSiteProfiles 285 317
IPR001680 WD40_rpt SMART 192 232
IPR001680 WD40_rpt SMART 278 317
IPR001680 WD40_rpt SMART 55 95
IPR001680 WD40_rpt SMART 98 137
IPR001680 WD40_rpt SMART 319 360
IPR001680 WD40_rpt SMART 235 274
IPR007287 Sof1 Pfam 361 447
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 54 360
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 25 139
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 161 433
IPR020472 G-protein_beta_WD-40_rep PRINTS 82 96
IPR020472 G-protein_beta_WD-40_rep PRINTS 347 361
IPR020472 G-protein_beta_WD-40_rep PRINTS 304 318
IPR001680 WD40_rpt ProSiteProfiles 105 137
IPR001680 WD40_rpt ProSiteProfiles 62 104
IPR001680 WD40_rpt Pfam 62 95
IPR001680 WD40_rpt Pfam 331 360
IPR001680 WD40_rpt Pfam 101 137
IPR001680 WD40_rpt Pfam 285 317
IPR001680 WD40_rpt ProSiteProfiles 328 369

No CAZYmes available for this sequence

No external refs found!