Sobic.001G015400.1

Description : Translation elongation factor EFG/EF2 protein

Gene families : OG_01_0001396 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001396_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G015400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G015400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_195
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_150

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	ISM	GOs from InterProScan
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000795	T_Tr_GTP-bd_dom	PRINTS	120	128
IPR000795	T_Tr_GTP-bd_dom	PRINTS	140	150
IPR000795	T_Tr_GTP-bd_dom	PRINTS	71	84
IPR000795	T_Tr_GTP-bd_dom	PRINTS	156	167
IPR000795	T_Tr_GTP-bd_dom	PRINTS	192	201
IPR009022	EFG_III	CDD	463	538
IPR000640	EFG_V-like	SMART	660	747
IPR035647	EFG_III/V	SUPERFAMILY	663	755
IPR000795	T_Tr_GTP-bd_dom	Pfam	68	341
IPR027417	P-loop_NTPase	Gene3D	54	346
IPR004540	Transl_elong_EFG/EF2	TIGRFAM	65	750
IPR027417	P-loop_NTPase	SUPERFAMILY	66	341
IPR004540	Transl_elong_EFG/EF2	Hamap	65	751
IPR000640	EFG_V-like	Pfam	661	746
IPR005517	Transl_elong_EFG/EF2_IV	CDD	541	658
IPR005517	Transl_elong_EFG/EF2_IV	Pfam	537	658
IPR009000	Transl_B-barrel_sf	SUPERFAMILY	308	460
IPR014721	Ribsml_uS5_D2-typ_fold_subgr	Gene3D	543	747
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	537	659
IPR005517	Transl_elong_EFG/EF2_IV	SMART	538	658
IPR000795	T_Tr_GTP-bd_dom	ProSiteProfiles	67	345
IPR035647	EFG_III/V	SUPERFAMILY	460	537
IPR005225	Small_GTP-bd_dom	TIGRFAM	70	242
IPR041095	EFG_II	Pfam	462	536
IPR031157	G_TR_CS	ProSitePatterns	113	128
IPR004161	EFTu-like_2	Pfam	383	449

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G015400.1

Expression Profile

Co-expression Networks

Functional Annotation