Sobic.001G016300.2

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG_01_0010363 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010363_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G016300.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G016300.2	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_276

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	157	191
IPR002885	Pentatricopeptide_rpt	Pfam	398	427
IPR002885	Pentatricopeptide_rpt	Pfam	332	356
IPR002885	Pentatricopeptide_rpt	Pfam	159	189
IPR002885	Pentatricopeptide_rpt	Pfam	232	254
IPR011990	TPR-like_helical_dom_sf	Gene3D	107	211
IPR045215	PPR_prot_At1g15510	PANTHER	47	121
IPR011990	TPR-like_helical_dom_sf	Gene3D	15	106
IPR011990	TPR-like_helical_dom_sf	Gene3D	212	314
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	329	359
IPR011990	TPR-like_helical_dom_sf	Gene3D	315	429
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	59	93
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	258	292
IPR002885	Pentatricopeptide_rpt	Pfam	58	105
IPR002885	Pentatricopeptide_rpt	Pfam	258	304
IPR002885	Pentatricopeptide_rpt	TIGRFAM	33	60
IPR002885	Pentatricopeptide_rpt	TIGRFAM	159	192
IPR002885	Pentatricopeptide_rpt	TIGRFAM	333	356
IPR002885	Pentatricopeptide_rpt	TIGRFAM	61	95
IPR002885	Pentatricopeptide_rpt	TIGRFAM	261	293
IPR045215	PPR_prot_At1g15510	PANTHER	120	473
IPR045215	PPR_prot_At1g15510	PANTHER	1	44

No CAZYmes available for this sequence

External Links

No external refs found!