Sobic.001G024000.1

Description : pumilio 24

Gene families : OG_01_0002246 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002246_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G024000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G024000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_108

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR033133	PUM-HD	ProSiteProfiles	87	434
IPR001313	Pumilio_RNA-bd_rpt	SMART	409	446
IPR001313	Pumilio_RNA-bd_rpt	SMART	115	150
IPR001313	Pumilio_RNA-bd_rpt	SMART	187	222
IPR001313	Pumilio_RNA-bd_rpt	SMART	151	186
IPR001313	Pumilio_RNA-bd_rpt	SMART	371	407
IPR016024	ARM-type_fold	SUPERFAMILY	96	306
IPR016024	ARM-type_fold	SUPERFAMILY	337	441
IPR011989	ARM-like	Gene3D	326	638
IPR012959	CPL_dom	Pfam	485	583
IPR001313	Pumilio_RNA-bd_rpt	ProSiteProfiles	150	186
IPR001313	Pumilio_RNA-bd_rpt	Pfam	131	153
IPR011989	ARM-like	Gene3D	87	313
IPR040059	PUM3	PANTHER	1	646

No CAZYmes available for this sequence

External Links

No external refs found!