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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0008482 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008482_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G025800.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G025800.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| MF | GO:0008270 | zinc ion binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 227 | 352 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 354 | 586 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 287 | 321 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 388 | 422 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 424 | 455 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 185 | 216 |
| IPR032867 | DYW_dom | Pfam | 558 | 681 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 183 | 217 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 139 | 226 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 1 | 138 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 386 | 420 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 287 | 331 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 386 | 432 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 421 | 455 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 285 | 319 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 54 | 78 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 82 | 109 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 359 | 384 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 157 | 177 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 459 | 483 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 185 | 215 |
No CAZYmes available for this sequence
| No external refs found! |