Sobic.001G033300.1

Description : expansin A4

Gene families : OG_01_0000144 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000144_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G033300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G033300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_84
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_112

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009664	plant-type cell wall organization	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071669	plant-type cell wall organization or biogenesis	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002963	Expansin	PRINTS	93	104
IPR002963	Expansin	PRINTS	143	156
IPR002963	Expansin	PRINTS	214	235
IPR002963	Expansin	PRINTS	107	117
IPR002963	Expansin	PRINTS	243	259
IPR002963	Expansin	PRINTS	126	143
IPR002963	Expansin	PRINTS	167	179
IPR002963	Expansin	PRINTS	179	200
IPR002963	Expansin	PRINTS	64	78
IPR009009	RlpA-like_DPBB	Pfam	70	158
IPR036908	RlpA-like_sf	Gene3D	21	164
IPR007117	Expansin_CBD	ProSiteProfiles	178	257
IPR036749	Expansin_CBD_sf	SUPERFAMILY	165	257
IPR007118	Expan_Lol_pI	PRINTS	205	219
IPR007118	Expan_Lol_pI	PRINTS	73	91
IPR007118	Expan_Lol_pI	PRINTS	151	167
IPR007118	Expan_Lol_pI	PRINTS	243	257
IPR007118	Expan_Lol_pI	PRINTS	33	48
IPR007118	Expan_Lol_pI	PRINTS	51	69
IPR007117	Expansin_CBD	Pfam	169	246
IPR036908	RlpA-like_sf	SUPERFAMILY	10	186
IPR036749	Expansin_CBD_sf	Gene3D	168	260
IPR007112	Expansin/allergen_DPBB_dom	SMART	69	158
IPR007112	Expansin/allergen_DPBB_dom	ProSiteProfiles	52	168
IPR002963	Expansin	PANTHER	8	261

No CAZYmes available for this sequence

External Links

No external refs found!