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  5. Sobic.001G033600.2

Sobic.001G033600.2


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0011853 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011853_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G033600.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G033600.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_4


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 199 233
IPR032867 DYW_dom Pfam 473 597
IPR002885 Pentatricopeptide_rpt TIGRFAM 302 335
IPR002885 Pentatricopeptide_rpt TIGRFAM 273 299
IPR002885 Pentatricopeptide_rpt TIGRFAM 339 370
IPR002885 Pentatricopeptide_rpt TIGRFAM 201 235
IPR011990 TPR-like_helical_dom_sf Gene3D 152 250
IPR011990 TPR-like_helical_dom_sf Gene3D 251 361
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 300 334
IPR002885 Pentatricopeptide_rpt Pfam 273 299
IPR002885 Pentatricopeptide_rpt Pfam 374 399
IPR002885 Pentatricopeptide_rpt Pfam 300 346
IPR002885 Pentatricopeptide_rpt Pfam 199 239
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 269 299
IPR011990 TPR-like_helical_dom_sf Gene3D 362 434

No CAZYmes available for this sequence

No external refs found!