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  5. Sobic.001G045400.1

Sobic.001G045400.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0019096 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019096_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G045400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G045400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_115
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_5


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 ProSitePatterns 285 298
IPR006626 PbH1 SMART 228 254
IPR006626 PbH1 SMART 337 358
IPR006626 PbH1 SMART 255 276
IPR006626 PbH1 SMART 278 298
IPR006626 PbH1 SMART 308 329
IPR006626 PbH1 SMART 371 398
IPR000743 Glyco_hydro_28 Pfam 100 431
IPR012334 Pectin_lyas_fold Gene3D 57 450
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 62 445
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 468 4.9e-100 95 431
No external refs found!