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  5. Sobic.001G049600.1

Sobic.001G049600.1


Description : squalene synthase 1


Gene families : OG_01_0008945 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008945_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G049600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G049600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_22
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235


Type GO Term Name Evidence Source
MF GO:0004310 farnesyl-diphosphate farnesyltransferase activity ISM GOs from InterProScan
MF GO:0004311 farnesyltranstransferase activity ISM GOs from InterProScan
BP GO:0008610 lipid biosynthetic process ISM GOs from InterProScan
BP GO:0009058 biosynthetic process ISM GOs from InterProScan
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019845 Squalene/phytoene_synthase_CS ProSitePatterns 197 225
IPR044844 Trans_IPPS_euk-type PANTHER 4 398
IPR008949 Isoprenoid_synthase_dom_sf SUPERFAMILY 33 363
IPR002060 Squ/phyt_synthse SFLD 30 321
IPR006449 Squal_synth-like TIGRFAM 32 363
IPR002060 Squ/phyt_synthse Pfam 40 310
IPR019845 Squalene/phytoene_synthase_CS ProSitePatterns 164 179
IPR033904 Trans_IPPS_HH CDD 34 316
IPR008949 Isoprenoid_synthase_dom_sf Gene3D 30 366

No CAZYmes available for this sequence

No external refs found!