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  5. Sobic.001G052100.2

Sobic.001G052100.2


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0010689 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010689_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G052100.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G052100.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_313


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 324 371
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 324 358
IPR002885 Pentatricopeptide_rpt TIGRFAM 51 73
IPR002885 Pentatricopeptide_rpt TIGRFAM 221 248
IPR002885 Pentatricopeptide_rpt TIGRFAM 326 359
IPR002885 Pentatricopeptide_rpt TIGRFAM 80 112
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 221
IPR002885 Pentatricopeptide_rpt Pfam 397 423
IPR002885 Pentatricopeptide_rpt Pfam 298 318
IPR002885 Pentatricopeptide_rpt Pfam 51 75
IPR002885 Pentatricopeptide_rpt Pfam 79 109
IPR002885 Pentatricopeptide_rpt Pfam 217 246
IPR011990 TPR-like_helical_dom_sf Gene3D 140 294
IPR011990 TPR-like_helical_dom_sf Gene3D 295 512
IPR011990 TPR-like_helical_dom_sf Gene3D 13 139
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 77 111
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 219 253
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 188 218

No CAZYmes available for this sequence

No external refs found!