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Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG_01_0002121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002121_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G052400.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G052400.2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_300 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_228 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000504 | RRM_dom | ProSiteProfiles | 34 | 112 |
| IPR000504 | RRM_dom | SMART | 654 | 742 |
| IPR000504 | RRM_dom | SMART | 287 | 360 |
| IPR000504 | RRM_dom | SMART | 502 | 580 |
| IPR000504 | RRM_dom | SMART | 35 | 108 |
| IPR000504 | RRM_dom | ProSiteProfiles | 501 | 584 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 277 | 383 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 284 | 367 |
| IPR000504 | RRM_dom | ProSiteProfiles | 286 | 364 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 652 | 744 |
| IPR003954 | RRM_dom_euk | SMART | 287 | 360 |
| IPR003954 | RRM_dom_euk | SMART | 35 | 108 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 501 | 728 |
| IPR000504 | RRM_dom | ProSiteProfiles | 653 | 746 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 33 | 272 |
| IPR000504 | RRM_dom | Pfam | 288 | 356 |
| IPR000504 | RRM_dom | Pfam | 503 | 563 |
| IPR000504 | RRM_dom | Pfam | 36 | 106 |
| IPR000504 | RRM_dom | Pfam | 668 | 728 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 2 | 120 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 417 | 597 |
No CAZYmes available for this sequence
| No external refs found! |