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  5. Sobic.001G056400.1

Sobic.001G056400.1


Description : Aldolase-type TIM barrel family protein


Gene families : OG_01_0001280 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001280_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G056400.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G056400.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_214
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_132


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004834 tryptophan synthase activity ISM GOs from InterProScan
BP GO:0006568 tryptophan metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002028 Trp_synthase_suA Hamap 87 338
IPR011060 RibuloseP-bd_barrel SUPERFAMILY 78 320
IPR002028 Trp_synthase_suA Pfam 81 339
IPR013785 Aldolase_TIM Gene3D 76 340
IPR018204 Trp_synthase_alpha_AS ProSitePatterns 121 134
IPR002028 Trp_synthase_suA CDD 91 336
IPR002028 Trp_synthase_suA TIGRFAM 83 336
IPR002028 Trp_synthase_suA PANTHER 1 340

No CAZYmes available for this sequence

No external refs found!