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  5. Sobic.001G058800.1

Sobic.001G058800.1


Description : Cysteine proteinases superfamily protein


Gene families : OG_01_0003287 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003287_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G058800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G058800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_8
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_131


Type GO Term Name Evidence Source
BP GO:0006508 proteolysis ISM GOs from InterProScan
MF GO:0008234 cysteine-type peptidase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000668 Peptidase_C1A_C SMART 139 356
IPR039417 Peptidase_C1A_papain-like CDD 140 355
IPR000668 Peptidase_C1A_C PRINTS 157 172
IPR000668 Peptidase_C1A_C PRINTS 300 310
IPR000668 Peptidase_C1A_C PRINTS 317 323
IPR038765 Papain-like_cys_pep_sf SUPERFAMILY 39 356
IPR000668 Peptidase_C1A_C Pfam 139 356
IPR025661 Pept_asp_AS ProSitePatterns 317 336
IPR000169 Pept_cys_AS ProSitePatterns 157 168
IPR013201 Prot_inhib_I29 SMART 46 103
IPR025660 Pept_his_AS ProSitePatterns 298 308
IPR013201 Prot_inhib_I29 Pfam 46 103

No CAZYmes available for this sequence

No external refs found!