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  5. Sobic.001G065300.2

Sobic.001G065300.2


Description : zinc knuckle (CCHC-type) family protein


Gene families : OG_01_0012846 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012846_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G065300.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G065300.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_181
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_543


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036875 Znf_CCHC_sf SUPERFAMILY 78 114
IPR001878 Znf_CCHC SMART 320 336
IPR001878 Znf_CCHC SMART 282 298
IPR001878 Znf_CCHC SMART 95 111
IPR001878 Znf_CCHC Pfam 95 111
IPR001878 Znf_CCHC Pfam 320 335
IPR001878 Znf_CCHC Pfam 282 298
IPR036875 Znf_CCHC_sf SUPERFAMILY 274 338
IPR010666 Znf_GRF Pfam 204 247
IPR010666 Znf_GRF Pfam 139 180
IPR001878 Znf_CCHC ProSiteProfiles 321 335
IPR001878 Znf_CCHC ProSiteProfiles 96 111
IPR001878 Znf_CCHC ProSiteProfiles 283 298

No CAZYmes available for this sequence

No external refs found!