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Description : Tetratricopeptide repeat (TPR)-like superfamily protein
Gene families : OG_01_0009656 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009656_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G069300.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G069300.2 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 5 | 130 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 433 | 680 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 516 | 550 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 279 | 313 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 481 | 515 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 340 | 432 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 178 | 212 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 380 | 414 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 450 | 480 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 77 | 111 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 245 | 339 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 77 | 123 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 480 | 528 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 379 | 427 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 178 | 224 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 131 | 244 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 152 | 177 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 284 | 308 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 558 | 579 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 354 | 377 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 284 | 315 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 79 | 112 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 180 | 213 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 382 | 415 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 152 | 179 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 483 | 516 |
No CAZYmes available for this sequence
| No external refs found! |