Sobic.001G073150.1

Description : flavodoxin family protein / radical SAM domain-containing protein

Gene families : OG_01_0005991 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005991_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G073150.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G073150.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_310
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_74

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0010181	FMN binding	ISM	GOs from InterProScan
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051539	4 iron, 4 sulfur cluster binding	ISM	GOs from InterProScan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR004159	Put_SAM_MeTrfase	PANTHER	13	727
IPR013917	tRNA_wybutosine-synth	Pfam	1174	1237
IPR029039	Flavoprotein-like_sf	Gene3D	721	867
IPR013785	Aldolase_TIM	Gene3D	919	1250
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	543	735
IPR008254	Flavodoxin/NO_synth	ProSiteProfiles	714	859
IPR004159	Put_SAM_MeTrfase	Pfam	246	721
IPR007197	rSAM	SFLD	931	1241
IPR007197	rSAM	Pfam	991	1171
IPR007197	rSAM	ProSiteProfiles	979	1222
IPR008254	Flavodoxin/NO_synth	Pfam	733	854
IPR029039	Flavoprotein-like_sf	SUPERFAMILY	727	862
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	264	458
IPR034556	tRNA_wybutosine-synthase	SFLD	931	1241

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G073150.1

Expression Profile

Co-expression Networks

Functional Annotation