Sobic.001G085800.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0015708 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015708_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G085800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G085800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_122

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005848	mRNA cleavage stimulating factor complex	ISM	GOs from InterProScan
CC	GO:0005849	mRNA cleavage factor complex	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	104	420
IPR001680	WD40_rpt	ProSiteProfiles	312	341
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	95	423
IPR001680	WD40_rpt	ProSiteProfiles	256	297
IPR044633	CstF1-like	PANTHER	2	422
IPR001680	WD40_rpt	ProSiteProfiles	112	153
IPR001680	WD40_rpt	SMART	105	144
IPR001680	WD40_rpt	SMART	291	332
IPR001680	WD40_rpt	SMART	206	244
IPR001680	WD40_rpt	SMART	249	288
IPR001680	WD40_rpt	SMART	161	200
IPR001680	WD40_rpt	SMART	380	420
IPR001680	WD40_rpt	ProSiteProfiles	168	209
IPR001680	WD40_rpt	Pfam	165	200
IPR001680	WD40_rpt	Pfam	216	237
IPR001680	WD40_rpt	Pfam	260	288
IPR001680	WD40_rpt	Pfam	294	331
IPR001680	WD40_rpt	Pfam	110	143

No CAZYmes available for this sequence

External Links

No external refs found!