Sobic.001G089600.1

Description : DEA(D/H)-box RNA helicase family protein

Gene families : OG_01_0000733 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000733_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G089600.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G089600.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_117
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_52

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	SMART	538	644
IPR027417	P-loop_NTPase	Gene3D	194	423
IPR001650	Helicase_C	Pfam	513	643
IPR007502	Helicase-assoc_dom	Pfam	707	780
IPR014720	dsRBD_dom	Pfam	1048	1107
IPR001650	Helicase_C	ProSiteProfiles	510	684
IPR027417	P-loop_NTPase	SUPERFAMILY	248	823
IPR014001	Helicase_ATP-bd	SMART	243	436
IPR014001	Helicase_ATP-bd	ProSiteProfiles	255	422
IPR027417	P-loop_NTPase	Gene3D	508	662
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	255	406
IPR007502	Helicase-assoc_dom	SMART	706	797
IPR011709	DEAD-box_helicase_OB_fold	Pfam	863	944

No CAZYmes available for this sequence

External Links

No external refs found!