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  5. Sobic.001G097000.1

Sobic.001G097000.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0050724 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0050724_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G097000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G097000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_241


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 357 386
IPR045182 JINGUBANG-like PANTHER 17 460
IPR020472 G-protein_beta_WD-40_rep PRINTS 244 258
IPR020472 G-protein_beta_WD-40_rep PRINTS 374 388
IPR020472 G-protein_beta_WD-40_rep PRINTS 285 299
IPR001680 WD40_rpt ProSiteProfiles 267 297
IPR001680 WD40_rpt ProSiteProfiles 224 266
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 111 453
IPR001680 WD40_rpt SMART 307 346
IPR001680 WD40_rpt SMART 260 298
IPR001680 WD40_rpt SMART 108 145
IPR001680 WD40_rpt SMART 218 257
IPR001680 WD40_rpt SMART 146 183
IPR001680 WD40_rpt SMART 350 387
IPR001680 WD40_rpt SMART 392 449
IPR001680 WD40_rpt Pfam 227 256
IPR001680 WD40_rpt Pfam 355 386
IPR001680 WD40_rpt Pfam 395 448
IPR001680 WD40_rpt Pfam 262 297
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 100 198
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 211 456

No CAZYmes available for this sequence

No external refs found!