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  5. Sobic.001G112300.1

Sobic.001G112300.1


Description : calmodulin 1


Gene families : OG_01_0000486 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000486_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G112300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G112300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_84
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_266


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002048 EF_hand_dom ProSiteProfiles 44 79
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 21 33
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 94 106
IPR002048 EF_hand_dom ProSiteProfiles 117 149
IPR002048 EF_hand_dom ProSiteProfiles 81 116
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 57 69
IPR002048 EF_hand_dom SMART 12 40
IPR002048 EF_hand_dom SMART 48 76
IPR002048 EF_hand_dom SMART 121 149
IPR002048 EF_hand_dom SMART 85 113
IPR002048 EF_hand_dom Pfam 14 73
IPR002048 EF_hand_dom Pfam 83 146
IPR002048 EF_hand_dom CDD 85 146
IPR002048 EF_hand_dom ProSiteProfiles 8 43
IPR002048 EF_hand_dom CDD 13 74
IPR011992 EF-hand-dom_pair SUPERFAMILY 2 148
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 130 142

No CAZYmes available for this sequence

No external refs found!