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  5. Sobic.001G127200.1

Sobic.001G127200.1


Description : CCCH-type zinc finger protein with ARM repeat domain


Gene families : OG_01_0013260 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013260_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G127200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G127200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_179
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002110 Ankyrin_rpt Pfam 90 158
IPR002110 Ankyrin_rpt SMART 90 120
IPR002110 Ankyrin_rpt SMART 125 157
IPR000571 Znf_CCCH ProSiteProfiles 308 330
IPR036770 Ankyrin_rpt-contain_sf SUPERFAMILY 90 168
IPR000571 Znf_CCCH Pfam 308 328
IPR000571 Znf_CCCH SMART 303 329
IPR000571 Znf_CCCH SMART 338 361
IPR002110 Ankyrin_rpt ProSiteProfiles 125 160
IPR036770 Ankyrin_rpt-contain_sf Gene3D 48 174
IPR045234 Unkempt-like PANTHER 31 739

No CAZYmes available for this sequence

No external refs found!