1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.001G140300.1

Sobic.001G140300.1


Description : glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein


Gene families : OG_01_0038861 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0038861_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G140300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G140300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_311
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_118


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
MF GO:0016798 hydrolase activity, acting on glycosyl bonds ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001000 GH10_dom PRINTS 473 485
IPR001000 GH10_dom PRINTS 555 566
IPR001000 GH10_dom PRINTS 587 599
IPR044846 GH10 PANTHER 13 747
IPR003305 CenC_carb-bd Pfam 196 340
IPR003305 CenC_carb-bd Pfam 23 162
IPR008979 Galactose-bd-like_sf SUPERFAMILY 194 356
IPR001000 GH10_dom SMART 442 692
IPR008979 Galactose-bd-like_sf SUPERFAMILY 22 179
IPR001000 GH10_dom ProSiteProfiles 394 691
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 397 699
IPR001000 GH10_dom Pfam 405 662
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM22 131 749 1.3e-37 197 339
GH10 303 749 3.1e-70 405 688
No external refs found!