Sobic.001G157300.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0008437 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008437_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G157300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G157300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_310
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_161

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0030515	snoRNA binding	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
MF	GO:0034511	U3 snoRNA binding	ISM	GOs from InterProScan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019775	WD40_repeat_CS	ProSitePatterns	231	245
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	147	511
IPR039241	Rrp9-like	PANTHER	6	505
IPR001680	WD40_rpt	ProSiteProfiles	153	194
IPR020472	G-protein_beta_WD-40_rep	PRINTS	231	245
IPR020472	G-protein_beta_WD-40_rep	PRINTS	355	369
IPR020472	G-protein_beta_WD-40_rep	PRINTS	273	287
IPR001680	WD40_rpt	ProSiteProfiles	254	295
IPR001680	WD40_rpt	Pfam	250	286
IPR001680	WD40_rpt	Pfam	215	244
IPR001680	WD40_rpt	Pfam	343	368
IPR001680	WD40_rpt	Pfam	155	185
IPR001680	WD40_rpt	SMART	247	286
IPR001680	WD40_rpt	SMART	289	327
IPR001680	WD40_rpt	SMART	329	368
IPR001680	WD40_rpt	SMART	206	244
IPR001680	WD40_rpt	SMART	147	185
IPR001680	WD40_rpt	SMART	404	443
IPR001680	WD40_rpt	ProSiteProfiles	212	253
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	151	481

No CAZYmes available for this sequence

External Links

No external refs found!