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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0018118 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018118_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G161100.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G161100.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 228 | 262 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 367 | 402 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 131 | 480 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 335 | 378 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 231 | 260 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 406 | 430 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 199 | 227 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 98 | 124 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 303 | 327 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 407 | 430 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 231 | 264 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 303 | 329 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 335 | 367 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 199 | 227 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 195 | 293 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 96 | 130 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 39 | 194 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 302 | 510 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 197 | 227 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 332 | 366 |
No CAZYmes available for this sequence
| No external refs found! |