Sobic.001G165700.1

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG_01_0003134 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003134_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G165700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G165700.1	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_84

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR015300	DNA-bd_pseudobarrel_sf	SUPERFAMILY	238	338
IPR003340	B3_DNA-bd	ProSiteProfiles	481	538
IPR003340	B3_DNA-bd	ProSiteProfiles	245	344
IPR011011	Znf_FYVE_PHD	SUPERFAMILY	24	80
IPR044837	REM16-like	PANTHER	34	125
IPR044837	REM16-like	PANTHER	152	540
IPR003340	B3_DNA-bd	SMART	244	344
IPR003340	B3_DNA-bd	SMART	440	538
IPR015300	DNA-bd_pseudobarrel_sf	SUPERFAMILY	433	537
IPR003340	B3_DNA-bd	Pfam	260	330
IPR003340	B3_DNA-bd	Pfam	480	537
IPR003340	B3_DNA-bd	CDD	438	536
IPR003340	B3_DNA-bd	CDD	243	341
IPR019786	Zinc_finger_PHD-type_CS	ProSitePatterns	32	77
IPR013083	Znf_RING/FYVE/PHD	Gene3D	25	98
IPR015300	DNA-bd_pseudobarrel_sf	Gene3D	418	540
IPR015300	DNA-bd_pseudobarrel_sf	Gene3D	222	344

No CAZYmes available for this sequence

External Links

No external refs found!