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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0017208 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017208_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G186200.3 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G186200.3 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_68 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 270 | 304 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 542 | 662 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 83 | 139 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 254 | 369 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 140 | 253 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 340 | 374 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 479 | 527 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 409 | 458 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 339 | 387 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 585 | 632 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 269 | 318 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 620 | 654 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 375 | 409 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 412 | 446 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 587 | 621 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 517 | 551 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 377 | 411 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 152 | 179 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 272 | 306 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 308 | 341 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 115 | 136 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 342 | 375 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 482 | 515 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 447 | 480 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 585 | 619 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 553 | 577 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 115 | 135 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 515 | 549 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 370 | 438 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 439 | 510 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 305 | 339 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 410 | 444 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 142 | 173 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 480 | 514 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 145 | 179 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 445 | 479 |
No CAZYmes available for this sequence
| No external refs found! |