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  5. Sobic.001G200600.1

Sobic.001G200600.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016342 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016342_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G200600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G200600.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 318 355
IPR002885 Pentatricopeptide_rpt TIGRFAM 358 392
IPR002885 Pentatricopeptide_rpt TIGRFAM 328 357
IPR002885 Pentatricopeptide_rpt TIGRFAM 393 426
IPR002885 Pentatricopeptide_rpt TIGRFAM 181 212
IPR011990 TPR-like_helical_dom_sf Gene3D 329 466
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 391 425
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 178 212
IPR002885 Pentatricopeptide_rpt Pfam 282 328
IPR002885 Pentatricopeptide_rpt Pfam 179 222
IPR002885 Pentatricopeptide_rpt Pfam 355 404
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 283 317
IPR011990 TPR-like_helical_dom_sf Gene3D 235 328
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 356 390
IPR011990 TPR-like_helical_dom_sf Gene3D 178 234

No CAZYmes available for this sequence

No external refs found!