Sobic.001G207400.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0005395 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005395_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G207400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G207400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_105
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_121

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005875	microtubule associated complex	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	None	Extended
BP	GO:0007017	microtubule-based process	None	Extended
MF	GO:0008017	microtubule binding	ISM	GOs from InterProScan
MF	GO:0008092	cytoskeletal protein binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0008352	katanin complex	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015631	tubulin binding	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0051013	microtubule severing	ISM	GOs from InterProScan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR028021	Katanin_C-terminal	Pfam	707	863
IPR019775	WD40_repeat_CS	ProSitePatterns	158	172
IPR001680	WD40_rpt	ProSiteProfiles	97	138
IPR001680	WD40_rpt	ProSiteProfiles	139	180
IPR001680	WD40_rpt	Pfam	91	129
IPR001680	WD40_rpt	Pfam	134	171
IPR001680	WD40_rpt	Pfam	175	213
IPR020472	G-protein_beta_WD-40_rep	PRINTS	200	214
IPR020472	G-protein_beta_WD-40_rep	PRINTS	116	130
IPR020472	G-protein_beta_WD-40_rep	PRINTS	158	172
IPR019775	WD40_repeat_CS	ProSitePatterns	116	130
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	2	312
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	6	272
IPR001680	WD40_rpt	ProSiteProfiles	181	222
IPR001680	WD40_rpt	SMART	5	45
IPR001680	WD40_rpt	SMART	224	262
IPR001680	WD40_rpt	SMART	174	213
IPR001680	WD40_rpt	SMART	90	129
IPR001680	WD40_rpt	SMART	132	171
IPR001680	WD40_rpt	SMART	48	87
IPR026962	KTNB1	Hamap	1	867
IPR019775	WD40_repeat_CS	ProSitePatterns	200	214
IPR001680	WD40_rpt	ProSiteProfiles	55	96
IPR001680	WD40_rpt	ProSiteProfiles	12	54

No CAZYmes available for this sequence

External Links

No external refs found!