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  5. Sobic.001G212200.1

Sobic.001G212200.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016414 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016414_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G212200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G212200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_156


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 159 547
IPR011990 TPR-like_helical_dom_sf Gene3D 149 284
IPR011990 TPR-like_helical_dom_sf Gene3D 15 141
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 388 422
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 83 117
IPR002885 Pentatricopeptide_rpt Pfam 455 486
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 287 321
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 459 489
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 273 547
IPR002885 Pentatricopeptide_rpt Pfam 287 334
IPR002885 Pentatricopeptide_rpt Pfam 389 435
IPR011990 TPR-like_helical_dom_sf Gene3D 293 559
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 184 218
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 423 458
IPR002885 Pentatricopeptide_rpt Pfam 159 182
IPR002885 Pentatricopeptide_rpt Pfam 85 113
IPR002885 Pentatricopeptide_rpt Pfam 186 216
IPR002885 Pentatricopeptide_rpt Pfam 260 278
IPR002885 Pentatricopeptide_rpt Pfam 534 556
IPR002885 Pentatricopeptide_rpt TIGRFAM 390 423
IPR002885 Pentatricopeptide_rpt TIGRFAM 85 118
IPR002885 Pentatricopeptide_rpt TIGRFAM 186 217
IPR002885 Pentatricopeptide_rpt TIGRFAM 292 323
IPR002885 Pentatricopeptide_rpt TIGRFAM 463 486
IPR002885 Pentatricopeptide_rpt TIGRFAM 425 458

No CAZYmes available for this sequence

No external refs found!