Sobic.001G214000.1

Description : dicer-like 3

Gene families : OG_01_0005918 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005918_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G214000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G214000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_50
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_196

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004519	endonuclease activity	None	Extended
MF	GO:0004521	RNA endonuclease activity	None	Extended
MF	GO:0004525	ribonuclease III activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016891	RNA endonuclease activity, producing 5'-phosphomonoesters	ISM	GOs from InterProScan
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000999	RNase_III_dom	ProSiteProfiles	1230	1378
IPR036389	RNase_III_sf	SUPERFAMILY	1229	1397
IPR000999	RNase_III_dom	SMART	1034	1206
IPR000999	RNase_III_dom	SMART	1245	1401
IPR014001	Helicase_ATP-bd	SMART	22	221
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	29	164
IPR003100	PAZ_dom	SMART	850	1017
IPR027417	P-loop_NTPase	Gene3D	21	258
IPR005034	Dicer_dimerisation_dom	ProSiteProfiles	568	658
IPR036389	RNase_III_sf	Gene3D	1221	1399
IPR036389	RNase_III_sf	Gene3D	1010	1199
IPR003100	PAZ_dom	ProSiteProfiles	883	993
IPR000999	RNase_III_dom	Pfam	1052	1186
IPR000999	RNase_III_dom	Pfam	1266	1376
IPR000999	RNase_III_dom	ProSiteProfiles	1018	1187
IPR027417	P-loop_NTPase	SUPERFAMILY	75	509
IPR027417	P-loop_NTPase	Gene3D	372	532
IPR003100	PAZ_dom	Pfam	882	1013
IPR036389	RNase_III_sf	SUPERFAMILY	1009	1206
IPR014001	Helicase_ATP-bd	ProSiteProfiles	33	191
IPR001650	Helicase_C	Pfam	381	500
IPR038248	Dicer_dimer_sf	Gene3D	563	660
IPR001650	Helicase_C	SMART	411	502
IPR000999	RNase_III_dom	CDD	1246	1399
IPR000999	RNase_III_dom	CDD	1034	1203
IPR000999	RNase_III_dom	ProSitePatterns	1266	1274
IPR001650	Helicase_C	ProSiteProfiles	381	541
IPR036085	PAZ_dom_sf	SUPERFAMILY	880	988

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.001G214000.1

Expression Profile

Co-expression Networks

Functional Annotation