Sobic.001G230400.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0005765 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005765_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.001G230400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.001G230400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_15
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016835	carbon-oxygen lyase activity	None	Extended
MF	GO:0016837	carbon-oxygen lyase activity, acting on polysaccharides	None	Extended
MF	GO:0030570	pectate lyase activity	ISM	GOs from InterProScan

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	70	411
IPR045032	PEL	PANTHER	17	432
IPR012334	Pectin_lyas_fold	Gene3D	69	413
IPR002022	Pec_lyase	SMART	145	343
IPR002022	Pec_lyase	Pfam	155	335
IPR018082	AmbAllergen	PRINTS	320	339
IPR018082	AmbAllergen	PRINTS	362	386
IPR018082	AmbAllergen	PRINTS	117	142
IPR018082	AmbAllergen	PRINTS	93	110
IPR018082	AmbAllergen	PRINTS	391	414
IPR018082	AmbAllergen	PRINTS	153	169
IPR018082	AmbAllergen	PRINTS	218	239
IPR018082	AmbAllergen	PRINTS	298	317

No CAZYmes available for this sequence

External Links

No external refs found!